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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20658952_20659930_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20658952 - 20659930
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATCATTTAAAA
Flanking Amino Acid:
FTLDPFSLPSGDALPVKCPE
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.8
0.36
1.7
78
40.1
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
51.2
0.03
1.6
60.45
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012345
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012928
20634897 - 20668220
33324