Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20662459_20663262_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20662459 - 20663262

Intron Length:

804

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGGTTACCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

TTTTGGTTACCT

Flanking Amino Acid:

TEIHEQMYLRDLIDSKRSPL

Intron Amino Acid Position:

270

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.8

79.3

31.1

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

69.5

0.44

62.5

43.4

Minor 5ss

33.2

-1.9

2.8

46.4

Minor BPS

50.2

0.08

2.6

83.33

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012345

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012928

20634897 - 20668220

33324