Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20671130_20673506_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20671130 - 20673506

Intron Length:

2377

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTGAC

5'SS Class:

major

3'SS Sequence:

ATTAGTCCAGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAC

U12 Branch Point Sequence:

ACCACAGTAACT

Flanking Amino Acid:

EKGFICKKPKIYIFLALIGT

Intron Amino Acid Position:

1293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

69.5

35.6

Major BPS

61.1

0.28

1.1

69.4

35.9

Major PPT

62.2

0.28

39.2

Minor 5ss

34.3

-1.8

3.2

40.1

Minor BPS

46.1

-0.2

2.3

64.06

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012332

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039291

20670831 - 20707144

36314