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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20673675_20675100_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20673675 - 20675100
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTGCTACTAACA
Flanking Amino Acid:
FWIGIYRNADGLLLWQDNSA
Intron Amino Acid Position:
1094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
69
0.43
1
60.8
40.4
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
49.3
-0
1.9
66.64
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561
ENSAPLT00000039291
20670831 - 20707144
36314
ENSAPLT00000012841
20670831 - 20704434
33604