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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20679925_20681169_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20679925 - 20681169
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTGTTTCAATT
Flanking Amino Acid:
PLWIGLKSNAGYGYYRWTDK
Intron Amino Acid Position:
951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.9
0.56
0.9
71.7
38.3
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
54.6
0.22
1.6
70.72
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561
ENSAPLT00000039291
20670831 - 20707144
36314
ENSAPLT00000012841
20670831 - 20704434
33604