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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20684021_20685178_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20684021 - 20685178
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCATTTTTAAAT
Flanking Amino Acid:
LASIHNDQVQAFLTFNLKDV
Intron Amino Acid Position:
788

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.1
0.79
0.8
84.6
30.4
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
60.5
0.41
1.4
68.96
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039291
20670831 - 20707144
36314
ENSAPLT00000012841
20670831 - 20704434
33604
ENSAPLT00000048329
20670831 - 20706391
35561