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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20687247_20688157_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20687247 - 20688157
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAGAT
U12 Branch Point Sequence:
TGCCCTGCAACC
Flanking Amino Acid:
GLVVSFDHKFSWLDKTPVDY
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
49.5
-0
1.3
46.4
47
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
45
-0.4
2.1
56.58
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561
ENSAPLT00000039291
20670831 - 20707144
36314
ENSAPLT00000012841
20670831 - 20704434
33604