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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20688241_20688974_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20688241 - 20688974
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
GCTTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TAGTGATTAAAT
Flanking Amino Acid:
ERKRQFIWKYIKTKEMAIFL
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
77.4
37.4
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
44.5
-0.6
2.9
63.8
40.4
Minor BPS
49.8
0.07
2.1
71.87
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012841
20670831 - 20704434
33604