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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20689130_20689218_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20689130 - 20689218
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
CCAGAATATCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GCTTCTTTATCT
Flanking Amino Acid:
LKPEPNYKLQATDDGWIIHE
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
48.7
-0
1.1
41.9
41.2
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
68.1
0.65
1.6
80.3
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561