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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20689258_20691790_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20689258 - 20691790
Intron Length:
2533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
LLNWICETKKGTLLKPEPNY
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
79.5
29.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
47.6
-0.2
2.8
64.6
46.8
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561
ENSAPLT00000039291
20670831 - 20707144
36314