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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20694136_20695442_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20694136 - 20695442
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCGTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCTCAACA
Flanking Amino Acid:
GASQGDSCYKFFVRERNLKK
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.3
67.1
44.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.9
0.79
0.8
81.9
28.6
Minor 5ss
35.4
-1.7
3.3
46.9
48.5
Minor BPS
78.1
0.88
1.4
87.43
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039291
20670831 - 20707144
36314
ENSAPLT00000012841
20670831 - 20704434
33604