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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20696373_20697240_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20696373 - 20697240
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TGTGTTTGAATA
Flanking Amino Acid:
SKAYLATVETRNEQAFLISL
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
88.3
0.86
0.7
86.1
26.6
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
54
0.12
1.5
63.99
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039291
20670831 - 20707144
36314
ENSAPLT00000012841
20670831 - 20704434
33604
ENSAPLT00000048329
20670831 - 20706391
35561