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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20697357_20698512_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20697357 - 20698512
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATATGTT
5'SS Class:
major
3'SS Sequence:
ATGTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGTTTTTCACA
Flanking Amino Acid:
EMIIDPGCQKGWKRYGSHCY
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
74
34.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.3
0.7
0.9
76.3
37.2
Minor 5ss
45.8
-0.4
3.3
65.8
40
Minor BPS
57.8
0.24
1.7
68.54
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561
ENSAPLT00000039291
20670831 - 20707144
36314
ENSAPLT00000012841
20670831 - 20704434
33604