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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20700013_20700847_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20700013 - 20700847
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TCAGAGCCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATG
Flanking Amino Acid:
YSFLVSQLDNKELWLGLNDL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1
65.5
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
55.3
0.12
1
47.4
40
Minor 5ss
32.8
-2
2.7
40.5
39
Minor BPS
48.5
-0.2
1.8
55.3
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039291
20670831 - 20707144
36314