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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20701031_20701841_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20701031 - 20701841
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTGCTTTTATT
Flanking Amino Acid:
FSSKPDSIPKEELRLIKCTD
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
74.9
38.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.8
0.67
0.8
78
35.1
Minor 5ss
39.1
-1.2
2.8
40.9
45.3
Minor BPS
58.9
0.36
1.7
76.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012841
20670831 - 20704434
33604