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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20701031_20701853_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20701031 - 20701853
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATACCCA
5'SS Class:
weak_major
3'SS Sequence:
GCTTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTGCTTTTATT
Flanking Amino Acid:
KKRKFSSKPDKELRLIKCTD
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.01
1.1
42.5
38.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.8
0.67
0.8
78
35.1
Minor 5ss
45.8
-0.4
2.9
62
43.5
Minor BPS
58.9
0.36
1.7
76.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561