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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20704298_20704354_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20704298 - 20704354
Intron Length:
57

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCAATCCT
5'SS Class:
major
3'SS Sequence:
ATGACACAGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTCAGTTTCACT
Flanking Amino Acid:
MTPYIDAIFWIEDASTG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.4
66.5
38.2
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
45.8
-0.2
1.2
38.9
38
Minor 5ss
23.7
-3
3.8
38.6
39.2
Minor BPS
48.5
-0
2.2
71.79
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012841
20670831 - 20704434
33604