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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20704365_20704421_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20704365 - 20704421
Intron Length:
57

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTTAATACT
5'SS Class:
weak_major
3'SS Sequence:
CATTTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATAGCTTTTACA
Flanking Amino Acid:
MTPYIDAIFWIEDA
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.8
0.16
1.2
63.9
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
0.9
73.8
36.5
Minor 5ss
36.3
-1.6
2.8
50.9
39
Minor BPS
56
0.18
1.7
66.11
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012841
20670831 - 20704434
33604