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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20705734_20706299_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20705734 - 20706299
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGTTCTA
5'SS Class:
weak_major
3'SS Sequence:
GATAGGCAGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
GATCCCTCAGTT
Flanking Amino Acid:
LLPSNLTELEELIDLLLGNQ
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.2
55.4
43.6
Major BPS
79.2
0.72
1
75
40
Major PPT
40.3
-0.5
1.7
31.5
41
Minor 5ss
37.7
-1.4
3.3
45.8
43.5
Minor BPS
50
0.08
1.8
68.43
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012332
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048329
20670831 - 20706391
35561