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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20712963_20716753_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20712963 - 20716753
Intron Length:
3791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTCT
5'SS Class:
major
3'SS Sequence:
TGTTGCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAAAATT
Flanking Amino Acid:
FWIGLYRNVDDQWLWLDNSA
Intron Amino Acid Position:
1306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.7
37.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.1
0.61
0.8
74.4
36.5
Minor 5ss
39.6
-1.2
3.3
54
45.1
Minor BPS
52.6
0.16
2.2
82.17
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849