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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20716871_20717297_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20716871 - 20717297
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
TAATGCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGCTTGTTAATG
Flanking Amino Acid:
ALASLECTRFGATLVSVENM
Intron Amino Acid Position:
1267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.7
38.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75
0.56
0.9
70.5
40.6
Minor 5ss
25.8
-2.8
3.2
33.5
42
Minor BPS
51.3
-0.1
2.1
58.97
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849