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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20718260_20718876_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20718260 - 20718876
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TAACTGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
ATTACCAAAACT
Flanking Amino Acid:
PVWIGLNSNMTGSYYKWIDN
Intron Amino Acid Position:
1161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
76.8
0.6
1
73.3
41.4
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
56.7
0.29
2
80.5
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849