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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20719110_20720349_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20719110 - 20720349
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATGTTTTAAAT
Flanking Amino Acid:
ERGYICQMNSLTTQFEVPAT
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.5
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81
0.7
0.7
77.6
24.3
Minor 5ss
38.8
-1.3
2.9
49.9
39.7
Minor BPS
63.9
0.51
1.5
77.65
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849