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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20720441_20721687_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20720441 - 20721687
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGAAA
5'SS Class:
major
3'SS Sequence:
TCCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTAATGATT
Flanking Amino Acid:
FEWLTDNTVETDCVFIIQSD
Intron Amino Acid Position:
1053

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.4
38.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.2
0.81
0.7
84.1
23.9
Minor 5ss
29.9
-2.3
3.3
39.1
46.3
Minor BPS
48.5
-0
1.8
74.43
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849