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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20723906_20725491_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20723906 - 20725491
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TAACTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
GTTTACTCAATC
Flanking Amino Acid:
ENCVVMSSKPGLWNDVNCGS
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
73.4
0.53
0.9
70.7
39.5
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
61.6
0.34
1.7
72.85
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849