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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20725593_20727094_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20725593 - 20727094
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATTAATAACT
Flanking Amino Acid:
GLKVSLDKKFSWVDGTPVTY
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82
0.72
0.9
86.9
24.3
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
55.3
0.24
1.9
76.45
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849