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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20727918_20728034_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20727918 - 20728034
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCTTATTTATCT
Flanking Amino Acid:
MLKPEPTDTYEYKTTVDGWV
Intron Amino Acid Position:
788

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
74.3
40.5
Minor 5ss
44.9
-0.5
3.2
63.2
43.8
Minor BPS
55.2
0.24
1.8
72.15
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849