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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20728071_20729609_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20728071 - 20729609
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
GACACATTATGC
Flanking Amino Acid:
LHNWLCQIKKGVMLKPEPTD
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
41.4
-0.6
2
46.34
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849