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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20729755_20730982_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20729755 - 20730982
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TTTTCTTCTATA
Flanking Amino Acid:
EGFAWSDGSPVRYTVLEDRS
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
88.5
0.87
0.6
84.7
23.1
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
58.7
0.27
1.8
75.17
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849