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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20732225_20734075_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20732225 - 20734075
Intron Length:
1851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATGTTTTAAAG
Flanking Amino Acid:
SSKYSSSCFKSFCRSDIKKK
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
0.9
70.8
40.1
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
57
0.08
1.6
60.98
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849