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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20734272_20735596_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20734272 - 20735596
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCTGTGA
5'SS Class:
major
3'SS Sequence:
CTCATAAAGGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
FAHWDVGTPGSKPGCVAMRT
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.1
55.7
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
48
-0.1
1.2
46.4
38.6
Minor 5ss
29.6
-2.3
3.3
38.7
46.4
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849