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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20735750_20736079_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20735750 - 20736079
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTCCCTTACAG
Flanking Amino Acid:
EKGYLATVESRYEQAYLTSL
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
80.1
0.68
0.8
73
31.2
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
55.1
0.02
1.9
62.06
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849