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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20736196_20736527_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20736196 - 20736527
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GATTCTATAATT
Flanking Amino Acid:
KESTDVGCTKGWRRYGTYCY
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.6
0.55
1
66.7
42.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
64.9
0.55
1.6
79.01
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849