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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20736642_20737307_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20736642 - 20737307
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTA
5'SS Class:
major
3'SS Sequence:
TCCTGCCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTAATCTCATTG
Flanking Amino Acid:
PEDCVLIKGQDGYWADYVCE
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
77.8
33.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
70.7
0.47
0.8
65.3
30.5
Minor 5ss
47.1
-0.3
2.9
65.1
46.1
Minor BPS
46.2
-0.4
1.8
52.88
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849