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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20737466_20739200_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20737466 - 20739200
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTCCGTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAG
U12 Branch Point Sequence:
TCCTTTCTAGTT
Flanking Amino Acid:
HSFIVSGLGYKPTDKLWIGL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
49.9
-0
1.7
58.5
47.9
Major PPT
75
0.56
0.9
72.7
37.5
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
46.7
-0.1
1.8
63.16
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849