Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20743887_20745263_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20743887 - 20745263

Intron Length:

1377

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGTCATTATCA

Flanking Amino Acid:

MDILCSQRYEETFTLLGNAF

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.3

32.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.2

0.81

0.7

84.7

30.2

Minor 5ss

30.9

-2.2

3.2

46.4

Minor BPS

62.9

0.4

1.9

76.63

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012779

20709692 - 20747540

37849