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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20745666_20747479_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20745666 - 20747479
Intron Length:
1814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTGCATTATTT
Flanking Amino Acid:
SVIHSALQLADTETFLMYNK
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
57.7
0.32
2
80.9
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012779
20709692 - 20747540
37849