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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20765758_20766179_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20765758 - 20766179
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTGTGGTAACT
Flanking Amino Acid:
EPTHDSSINKASKREAAASS
Intron Amino Acid Position:
1367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.8
38.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.2
0.75
0.7
80.1
32
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
47.8
-0
2.6
78.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525