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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20768596_20769276_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20768596 - 20769276
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATATTTAATT
Flanking Amino Acid:
PDASMMCIQMGASLVSIEDP
Intron Amino Acid Position:
1258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.9
0.63
0.9
75.4
38.5
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
67.9
0.64
1.4
79.11
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525