About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20769430_20770749_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20769430 - 20770749
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTCTCCTTAACA
Flanking Amino Acid:
TFLSVCKQSDELIPSEPPQL
Intron Amino Acid Position:
1207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
76.7
34.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
77
0.61
0.8
72.7
30.7
Minor 5ss
40.6
-1
3.2
54.1
45.6
Minor BPS
83.5
1.05
1.1
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525