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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20773899_20775402_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20773899 - 20775402
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCACATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTTATTA
Flanking Amino Acid:
AKGSRSYYSKDDCVYMIKNP
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
66.1
0.36
0.9
60.1
35.3
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
73.2
0.72
1.5
82.59
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525