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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20778740_20780297_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20778740 - 20780297
Intron Length:
1558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTCCCCTAAATT
Flanking Amino Acid:
GLSVSLDKTFRWMDGTPVNY
Intron Amino Acid Position:
870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
31.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.7
0.83
0.8
84.9
30
Minor 5ss
32.5
-2
3.2
40.8
45.4
Minor BPS
66.2
0.59
1.7
81.08
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525