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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20780366_20781263_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20780366 - 20781263
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
ESERTFLWKYIFYKDWGNNF
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
77.2
31.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.7
0.6
0.9
74.7
40
Minor 5ss
36.2
-1.6
3
48.5
40.6
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525