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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20781434_20781525_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20781434 - 20781525
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTCTGCTTAATG
Flanking Amino Acid:
SLKPEPTYTFDYEYIVSEDD
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.3
37.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
84.2
0.77
0.8
78
35.4
Minor 5ss
36.4
-1.5
3
51.1
45.2
Minor BPS
59.4
0.16
1.9
62.41
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525