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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20784081_20784830_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20784081 - 20784830
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CATAATCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTGTGCATAATC
Flanking Amino Acid:
SEEEQTLIAGMKRDYLHLSY
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
67.4
0.39
1
63
42.6
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
55.4
0.15
2
70.99
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525