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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20784953_20785339_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20784953 - 20785339
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
CTACTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CAGTGTTTAACT
Flanking Amino Acid:
SVPQSSFCFKIFQRGREKME
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
79
35.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.3
0.68
0.8
75.3
32.9
Minor 5ss
38.9
-1.2
3.7
57.4
41.7
Minor BPS
60.1
0.39
1.8
72.38
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525