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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20786131_20786899_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20786131 - 20786899
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTATTCTTCACA
Flanking Amino Acid:
NKAYLATVTDRYEQAFLTSV
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
84.7
0.78
0.8
80.1
31.7
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
69.3
0.6
1.7
79.69
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525