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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20787848_20788766_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20787848 - 20788766
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTACTT
5'SS Class:
major
3'SS Sequence:
TTACTATGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTTCTTACTA
Flanking Amino Acid:
KAVCIVMNREDGAWADSACE
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.5
42.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
71.3
0.48
1
69.8
40.3
Minor 5ss
36.9
-1.5
3.5
57.2
46.9
Minor BPS
65.9
0.5
1.6
74.1
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525