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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20790782_20791703_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20790782 - 20791703
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ATATTTTTGACT
Flanking Amino Acid:
SPFRYLNWAPGNPSVEHIKM
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73.9
0.54
1
74.6
28.1
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
71.3
0.75
1.1
81.28
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525