Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20791821_20791979_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20791821 - 20791979

Intron Length:

159

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAAGGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTACATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CCTTTAATAACT

Flanking Amino Acid:

TDLHEEMFLLGLTNDLGFNA

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

71.7

33.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

72.8

0.51

0.9

67.8

38.2

Minor 5ss

27.9

-2.5

3.5

37.1

47.5

Minor BPS

52.9

0.17

1.9

73.42

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012212

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012711

20765513 - 20796037

30525